Activation of transposable elements is linked to a region- and cell type-specific interferon response in Parkinson's disease.

Revue : Science advances

Parution : Mercredi 2 septembre 2026

Statut : code vérifié

Méthodes : Statistiques, Lissage, filtrage d'état, décompositions

Carte de traçage

Proposée automatiquement : ces liens ont été trouvés dans l'article et vérifiés à la source, sans relecture humaine. Elle recevra un DOI Zenodo quand un de ses auteurs l'aura validée avec son ORCID.

Code des auteurs

Zenodo 7589548

Licence : autre-ouverte

État : le lien répond

Preuve : fichiers inventoriés

Trouvé : le texte, « Gene and TE expression quantification using pseu »

19 fichiers

docs/js/menus.js — JavaScript, 172 lignes [lire ici]
docs/js/ui.js — JavaScript, 46 lignes [lire ici]
setup.py — Python, 21 lignes [lire ici]
src/truster/__init__.py — Python, 18 lignes [lire ici]
src/truster/bcolors.py — Python, 10 lignes [lire ici]
src/truster/cluster.py — Python, 195 lignes [lire ici]
src/truster/experiment.py — Python, 1 066 lignes [lire ici]
src/truster/jobHandler.py — Python, 122 lignes [lire ici]
src/truster/py_scripts/concatenate_fastqs.py — Python, 54 lignes [lire ici]
src/truster/py_scripts/plotVelocity.py — Python, 91 lignes [lire ici]
src/truster/r_scripts/get_clusters.R — R, 143 lignes [lire ici]
src/truster/r_scripts/merge_samples.R — R, 150 lignes [lire ici]
src/truster/r_scripts/normalize_TEexpression.R — R, 207 lignes [lire ici]
src/truster/r_scripts/normalize_TEexpression_vs2.R — R, 219 lignes [lire ici]
src/truster/r_scripts/plot_TEexpression.R — R, 157 lignes [lire ici]
src/truster/sample.py — Python, 163 lignes [lire ici]
test/src/test_concatenate_lanes.py — Python, 75 lignes [lire ici]
test/src/test_merge_clusters.py — Python, 67 lignes [lire ici]
README.md — Texte, 175 lignes [lire ici]

molecular-neurogenetics.github.io/truster

Licence : aucune : les auteurs gardent tous leurs droits

État : le lien répond

Preuve : le lien répond

Trouvé : le texte, « Gene and TE expression quantification using pseu »

Zenodo 17434560

Licence : CC-BY-4.0

État : le lien répond

Preuve : fichiers inventoriés

Trouvé : « Data, code, and materials availability: »

molecular-neurogenetics/pd_asap_garza2025

Licence : MIT

État : le lien répond

Preuve : fichiers inventoriés

Commit : 63d638f3d1d648231c870170f27a80f48f034109

Langages : Shell (341), R (20), Python (8), Jupyter (4)

Trouvé : la fiche de l'archive Zenodo

375 fichiers

code/ASAP_PMDBS_bulkRNAseq/preprocessing/Script_RunFC_Genes.sh — Shell, 21 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP158_PD_NP21-217_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP159_ctrl_16-119_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP160_ctrl_NP17-216_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP161_ctrl_NP18-46_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP162_ctrl_NP18-148_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP165_ctrl_NP16-284_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP166_ctrl_NP16-293_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP167_ctrl_NP17-20_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP168_ctrl_NP16-284_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP170_ctrl_NP17-20_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP172_ctrl_NP18-46_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP174_ctrl_NP16-119_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP175_ctrl_NP16-284_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP176_ctrl_NP18-148_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP180_ctrl_NP16-119_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP181_ctrl_NP16-293_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP184_ctrl_NP18-148_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP186_ctrl_NP16-119_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP188_ctrl_NP16-293_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP189_ctrl_NP18-148_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP196_PD_NP16-285_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP199_ctrl_NP19-218_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP200_ctrl_NP22-37_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP201_ctrl_NP22-75_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP202_PD_NP19-137_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP203_ctrl_NP19-218_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP217_ctrl_NP19-218_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP218_ctrl_NP22-37_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP219_ctrl_NP22-75_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP220_PD_NP19-137_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP221_ctrl_NP19-218_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP223_ctrl_NP22-37_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP224_ctrl_NP22-75_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP226_PD_NP16-285_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP227_PD_NP17-232_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP229_ctrl_NP19-137_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP230_ctrl_NP21-04_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/RunFC_ASAP231_ctrl_NP23-21_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 16 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_RunFC_TEs/testExoncounts.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP156_PD_NP21-57_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP157_PD_NP21-208_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP158_PD_NP21-217_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP159_ctrl_16-119_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP160_ctrl_NP17-216_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP161_ctrl_NP18-46_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP162_ctrl_NP18-148_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP163_PD_NP21-208_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP164_PD_NP21-217_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP165_ctrl_NP16-284_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP166_ctrl_NP16-293_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP167_ctrl_NP17-20_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP168_ctrl_NP16-284_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP170_ctrl_NP17-20_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP172_ctrl_NP18-46_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP173_PD_NP21-57_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP174_ctrl_NP16-119_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP175_ctrl_NP16-284_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP176_ctrl_NP18-148_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP177_PD_NP21-57_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP178_PD_NP21-208_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP179_PD_NP21-217_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP180_ctrl_NP16-119_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP181_ctrl_NP16-293_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP184_ctrl_NP18-148_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP185_PD_NP21-217_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP186_ctrl_NP16-119_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP188_ctrl_NP16-293_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP189_ctrl_NP18-148_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP190_PD_NP21-57_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP191_PD_NP21-208_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP192_PD_NP22-55_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP193_PD_NP22-55_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP194_PD_NP22-55_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP195_PD_NP22-55_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP196_PD_NP16-285_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP199_ctrl_NP19-218_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP200_ctrl_NP22-37_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP201_ctrl_NP22-75_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP202_PD_NP19-137_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP203_ctrl_NP19-218_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP204_PD_NP21-04_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP206_ctrl_NP22-75_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP207_PD_NP23-21_AMY_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP208_PD_NP16-285_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP209_PD_NP17-232_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP210_PD_NP19-91_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP211_PD_NP19-137_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP212_PD_NP21-04_SN_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP214_PD_NP16-285_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP215_PD_NP17-232_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP216_PD_NP19-91_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP217_ctrl_NP19-218_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP218_ctrl_NP22-37_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP219_ctrl_NP22-75_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP220_PD_NP19-137_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP221_ctrl_NP19-218_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP222_PD_NP21-04_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP223_ctrl_NP22-37_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP224_ctrl_NP22-75_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP225_PD_NP23-21_PUT_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP226_PD_NP16-285_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP227_PD_NP17-232_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP228_PD_NP19-91_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP229_ctrl_NP19-137_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP230_ctrl_NP21-04_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_Unique_STARalignment/UniMap_ASAP231_ctrl_NP23-21_PFC_bulk.sh — Shell, 11 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP158_PD_NP21-217_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP159_ctrl_16-119_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP160_ctrl_NP17-216_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP161_ctrl_NP18-46_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP162_ctrl_NP18-148_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP165_ctrl_NP16-284_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP166_ctrl_NP16-293_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP167_ctrl_NP17-20_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP168_ctrl_NP16-284_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP170_ctrl_NP17-20_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP172_ctrl_NP18-46_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP174_ctrl_NP16-119_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP175_ctrl_NP16-284_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP176_ctrl_NP18-148_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP180_ctrl_NP16-119_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP181_ctrl_NP16-293_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP184_ctrl_NP18-148_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP186_ctrl_NP16-119_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP188_ctrl_NP16-293_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP189_ctrl_NP18-148_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP196_PD_NP16-285_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP199_ctrl_NP19-218_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP200_ctrl_NP22-37_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP201_ctrl_NP22-75_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP202_PD_NP19-137_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP203_ctrl_NP19-218_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP217_ctrl_NP19-218_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP218_ctrl_NP22-37_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP219_ctrl_NP22-75_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP220_PD_NP19-137_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP221_ctrl_NP19-218_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP223_ctrl_NP22-37_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP224_ctrl_NP22-75_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP226_PD_NP16-285_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP227_PD_NP17-232_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP229_ctrl_NP19-137_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP230_ctrl_NP21-04_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_forward/forward_convert_ASAP231_ctrl_NP23-21_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP158_PD_NP21-217_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP159_ctrl_16-119_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP160_ctrl_NP17-216_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP161_ctrl_NP18-46_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP162_ctrl_NP18-148_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP165_ctrl_NP16-284_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP166_ctrl_NP16-293_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP167_ctrl_NP17-20_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP168_ctrl_NP16-284_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP170_ctrl_NP17-20_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP172_ctrl_NP18-46_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP174_ctrl_NP16-119_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP175_ctrl_NP16-284_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP176_ctrl_NP18-148_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP180_ctrl_NP16-119_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP181_ctrl_NP16-293_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP184_ctrl_NP18-148_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP186_ctrl_NP16-119_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP188_ctrl_NP16-293_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP189_ctrl_NP18-148_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP196_PD_NP16-285_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP199_ctrl_NP19-218_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP200_ctrl_NP22-37_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP201_ctrl_NP22-75_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP202_PD_NP19-137_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP203_ctrl_NP19-218_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP217_ctrl_NP19-218_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP218_ctrl_NP22-37_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP219_ctrl_NP22-75_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP220_PD_NP19-137_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP221_ctrl_NP19-218_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP223_ctrl_NP22-37_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 18 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP224_ctrl_NP22-75_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP226_PD_NP16-285_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP227_PD_NP17-232_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP229_ctrl_NP19-137_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP230_ctrl_NP21-04_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_convertBamtoBigWig_reverse/reverse_convert_ASAP231_ctrl_NP23-21_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 15 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP156_PD_NP21-57_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP157_PD_NP21-208_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP158_PD_NP21-217_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP159_ctrl_16-119_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP160_ctrl_NP17-216_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP161_ctrl_NP18-46_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP162_ctrl_NP18-148_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP163_PD_NP21-208_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP164_PD_NP21-217_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP165_ctrl_NP16-284_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP166_ctrl_NP16-293_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP167_ctrl_NP17-20_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP168_ctrl_NP16-284_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP170_ctrl_NP17-20_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP172_ctrl_NP18-46_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP173_PD_NP21-57_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP174_ctrl_NP16-119_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP175_ctrl_NP16-284_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP176_ctrl_NP18-148_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP177_PD_NP21-57_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP178_PD_NP21-208_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP179_PD_NP21-217_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP180_ctrl_NP16-119_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP181_ctrl_NP16-293_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP184_ctrl_NP18-148_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP185_PD_NP21-217_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP186_ctrl_NP16-119_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP188_ctrl_NP16-293_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP189_ctrl_NP18-148_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP190_PD_NP21-57_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP191_PD_NP21-208_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP192_PD_NP22-55_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP193_PD_NP22-55_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP194_PD_NP22-55_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP195_PD_NP22-55_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP196_PD_NP16-285_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP199_ctrl_NP19-218_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP200_ctrl_NP22-37_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP201_ctrl_NP22-75_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP202_PD_NP19-137_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP203_ctrl_NP19-218_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP204_PD_NP21-04_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP206_ctrl_NP22-75_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP207_PD_NP23-21_AMY_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP208_PD_NP16-285_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP209_PD_NP17-232_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP210_PD_NP19-91_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP211_PD_NP19-137_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP212_PD_NP21-04_SN_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP214_PD_NP16-285_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP215_PD_NP17-232_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP216_PD_NP19-91_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP217_ctrl_NP19-218_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP218_ctrl_NP22-37_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP219_ctrl_NP22-75_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP220_PD_NP19-137_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP221_ctrl_NP19-218_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP222_PD_NP21-04_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP223_ctrl_NP22-37_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP224_ctrl_NP22-75_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP225_PD_NP23-21_PUT_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP226_PD_NP16-285_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP227_PD_NP17-232_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP228_PD_NP19-91_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP229_ctrl_NP19-137_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP230_ctrl_NP21-04_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/preprocessing/Scripts_indexBAMFiles/index_ASAP231_ctrl_NP23-21_PFC_bulkAligned.sortedByCoord.out.bam.sh — Shell, 14 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/processing/ERVs_expressed.Rmd — R, 153 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/processing/FL_L1HS_L1PA3_expressed.Rmd — R, 166 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/processing/QC_normalization.Rmd — R, 93 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/processing/computeMatrix_ERVs_expressed.sh — Shell, 26 lignes [lire ici]
code/ASAP_PMDBS_bulkRNAseq/processing/computeMatrix_L1s_expressed.sh — Shell, 39 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_AMY.py — Python, 123 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_AMY_microglia.py — Python, 92 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_PFC.py — Python, 124 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_PFC_microglia.py — Python, 88 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_PUT.py — Python, 124 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_PUT_microglia.py — Python, 67 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_SN.py — Python, 124 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/preprocessing/main_asap_SN_microglia.py — Python, 68 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/ASAP_PMDBS_snRNAseq_PD_Ctl_DEA_wilcox.ipynb — Jupyter, 110 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/ASAP_PMDBS_snRNAseq_celltyping.ipynb — Jupyter, 282 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/ASAP_PMDBS_snRNAseq_integrated_umap.ipynb — Jupyter, 221 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/ASAP_PMDBS_snRNAseq_microglia_subclustering.ipynb — Jupyter, 104 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/DE_TE_heatmaps.Rmd — R, 292 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/HERV_characterization.Rmd — R, 172 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/HERV_expression_PDvsCtl.Rmd — R, 546 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/HERV_expression_PDvsCtl_batch_sex.Rmd — R, 320 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/HERV_gene_braak_analysis.Rmd — R, 223 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/L1_expression_PDvsCtl.Rmd — R, 330 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/QC_overview.Rmd — R, 285 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/TE_expression_PDvsCtl_ciseffect.Rmd — R, 303 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/TE_expression_celltype_markers.Rmd — R, 315 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/TE_expression_heatmaps.Rmd — R, 1 024 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/bedtools_window_upreg_TEs_genes.sh — Shell, 32 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/gene_DEA_GSEA.Rmd — R, 436 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/gene_DEA_GSEA_batch_sex.Rmd — R, 220 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/gene_DEA_stableFC_IFN_heatmap.Rmd — R, 53 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/intersect_upregulated_TEs_genes.sh — Shell, 85 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/microglia_subclustering.Rmd — R, 97 lignes [lire ici]
code/ASAP_PMDBS_snRNAseq/processing/microglia_subclustering_gene_DEA.Rmd — R, 301 lignes [lire ici]
code/ASAP_invitro/processing/ERV_DEA.Rmd — R, 400 lignes [lire ici]
code/ASAP_invitro/processing/gene_DEA.Rmd — R, 547 lignes [lire ici]
LICENSE.md — Licence, 22 lignes [lire ici]
README.md — Texte, 69 lignes [lire ici]