Deltas' and spindles' cross-area synchronization and ripple subtypes.
Revue : Sleep
Parution : Mardi 1 septembre 2026
DOI : 10.1093/sleep/zsag168
Statut : code vérifié
Méthodes : Spectre et temps-fréquence, Prétraitement, Connectivité, Statistiques, Lissage, filtrage d'état, décompositions, Apprentissage, Potentiels évoqués, Activité unitaire, imagerie calcique
Carte de traçage
Proposée automatiquement : ces liens ont été trouvés dans l'article et vérifiés à la source, sans relecture humaine. Elle recevra un DOI Zenodo quand un de ses auteurs l'aura validée avec son ORCID.
Code des auteurs
genzellab/rgs14
Licence : AGPL-3.0
État : le lien répond
Preuve : fichiers inventoriés
Commit :
95cc6cb5785a15a3e65ae80fd40fe7cad5ed9039Langages : MATLAB (50)
Trouvé : « Data availability »
52 fichiers
- nonrem_oscillations/Cooccurrence_detection.m — MATLAB, 50 lignes [lire ici]
- nonrem_oscillations/Delta_analysis_Kopal.m — MATLAB, 1 372 lignes [lire ici]
- nonrem_oscillations/Required_Functions/FindDeltaWavesRGS14.m — MATLAB, 156 lignes [lire ici]
- nonrem_oscillations/Required_Functions/FindSpindlesRGS14.m — MATLAB, 186 lignes [lire ici]
- nonrem_oscillations/Required_Functions/cooccurrence_vec.m — MATLAB, 37 lignes [lire ici]
- nonrem_oscillations/Required_Functions/ripple_detection.m — MATLAB, 95 lignes [lire ici]
- nonrem_oscillations/Required_Functions/spindles_detection.m — MATLAB, 118 lignes [lire ici]
- nonrem_oscillations/Required_Functions/swr_check_thr.m — MATLAB, 167 lignes [lire ici]
- nonrem_oscillations/Ripple_naming_system.m — MATLAB, 75 lignes [lire ici]
- nonrem_oscillations/SWR_analysis_Kopal.m — MATLAB, 533 lignes [lire ici]
- nonrem_oscillations/Sequence_Detection.m — MATLAB, 177 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/GC_ripple_4clusters_median_wa.m — MATLAB, 212 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/MAIN_script_ripples_pca_threshold_gmm.m — MATLAB, 506 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/functions/chanscale_common.m — MATLAB, 176 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/functions/colorbar_treatment.m — MATLAB, 124 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/functions/create_timecell.m — MATLAB, 7 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/functions/createauto_timefreq.m — MATLAB, 22 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/functions/delta_specs.m — MATLAB, 87 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/functions/ft_getminmax.m — MATLAB, 559 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/functions/getdimord.m — MATLAB, 675 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/functions/getdimsiz.m — MATLAB, 70 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/functions/power_signal.m — MATLAB, 5 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/functions/rollback_provenance.m — MATLAB, 92 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/functions/stats_high_granger.m — MATLAB, 136 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/functions/stats_high_spec.m — MATLAB, 121 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/functions/time_frequency.m — MATLAB, 18 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/granger_automation.m — MATLAB, 39 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/granger_main.m — MATLAB, 338 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/spectrogram_automation.m — MATLAB, 60 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/spectrogram_main.m — MATLAB, 99 lignes [lire ici]
- nonrem_oscillations/Spectrograms&GrangerCausality/split_waveforms_all.m — MATLAB, 160 lignes [lire ici]
- nonrem_oscillations/Spindle_analysis_Kopal.m — MATLAB, 359 lignes [lire ici]
- spiking_activity/Firing_Rates.m — MATLAB, 75 lignes [lire ici]
- spiking_activity/Neural_FR_During_Ripples.m — MATLAB, 148 lignes [lire ici]
- spiking_activity/Neurons_Grouped_By_Firing_Rates.m — MATLAB, 166 lignes [lire ici]
- spiking_activity/Required_Functions/Ripple_Analysis_All.m — MATLAB, 132 lignes [lire ici]
- spiking_activity/Required_Functions/Ripple_Colorplot.m — MATLAB, 58 lignes [lire ici]
- spiking_activity/Required_Functions/data_reduction.m — MATLAB, 33 lignes [lire ici]
- spiking_activity/Required_Functions/find_dict_rat.m — MATLAB, 67 lignes [lire ici]
- spiking_activity/Required_Functions/find_off_period.m — MATLAB, 38 lignes [lire ici]
- spiking_activity/Required_Functions/get_off_data_trial.m — MATLAB, 103 lignes [lire ici]
- spiking_activity/Required_Functions/get_off_data_trial_pt5.m — MATLAB, 102 lignes [lire ici]
- spiking_activity/Required_Functions/natsort.m — MATLAB, 344 lignes [lire ici]
- spiking_activity/Required_Functions/natsortfiles.m — MATLAB, 199 lignes [lire ici]
- spiking_activity/Required_Functions/on_minimum_spikenum.m — MATLAB, 24 lignes [lire ici]
- spiking_activity/Spikes_To_SO_Phase.m — MATLAB, 126 lignes [lire ici]
- spiking_activity/on_off_detections.m — MATLAB, 137 lignes [lire ici]
- spiking_activity/wake_firing_rates.m — MATLAB, 34 lignes [lire ici]
- theta/power_spectrum_systematic_sleep_rgs14_03032022.m — MATLAB, 168 lignes [lire ici]
- theta/trials_downsample.m — MATLAB, 509 lignes [lire ici]
- LICENSE — Licence, 674 lignes [lire ici]
- README.md — Texte, 22 lignes [lire ici]
genzellab/rgs14_clusters
Licence : aucune : les auteurs gardent tous leurs droits
État : le lien répond
Preuve : fichiers inventoriés
Commit :
4a287c820deb2c24743d1d8dad522ef3e4d5916eLangages : MATLAB (135), Python (6)
Trouvé : « Data availability »
142 fichiers, à lire à la source
Ce dépôt n'a pas de licence : ses auteurs gardent tous leurs droits. Lisez-le à la source.
- Adrian/3D_and_2D_clusterplots.py — Python, 1 103 lignes
- Adrian/CBD_Main_script.m — MATLAB, 159 lignes
- Adrian/Cooccurrence_detection_Clus2_LongShort.m — MATLAB, 165 lignes
- Adrian/Long_Short_RIpples_Clus2.m — MATLAB, 55 lignes
- Adrian/MAIN_script_2025.m — MATLAB, 624 lignes
- Adrian/automatize_cooccur_sheet_clusterselect_acrossdays_sorted.m — MATLAB, 85 lignes
- Adrian/automatize_cooccur_sheet_clusterselect_acrossdays_sorted_c3types.m — MATLAB, 91 lignes
- Adrian/automatize_cooccur_sheet_clusterselect_acrossdays_sorted_c3types_matlab.m — MATLAB, 102 lignes
- Adrian/automatize_cooccur_sheet_clusterselect_acrossdays_sorted_matlab.m — MATLAB, 84 lignes
- Adrian/automatize_dswr.m — MATLAB, 78 lignes
- Adrian/automatize_dswr_c3types.m — MATLAB, 167 lignes
- Adrian/automatize_dswr_c3types_matlab.m — MATLAB, 188 lignes
- Adrian/automatize_dswr_matlab.m — MATLAB, 80 lignes
- Adrian/automatize_seq_sorted.m — MATLAB, 125 lignes
- Adrian/automatize_seq_sorted_c3types.m — MATLAB, 138 lignes
- Adrian/automatize_seq_sorted_c3types_matlab.m — MATLAB, 139 lignes
- Adrian/automatize_seq_sorted_matlab.m — MATLAB, 116 lignes
- Adrian/c3split_sweep_analysis.m — MATLAB, 25 lignes
- Adrian/combine_cells.m — MATLAB, 14 lignes
- Adrian/compute_tpm.m — MATLAB, 84 lignes
- Adrian/doublet_raw_examples.m — MATLAB, 699 lignes
- Adrian/doublets_lags.m — MATLAB, 366 lignes
- Adrian/doublets_types_proportion.m — MATLAB, 118 lignes
- Adrian/functions/bout_duration_table.m — MATLAB, 13 lignes
- Adrian/functions/convert2matrix.m — MATLAB, 18 lignes
- Adrian/functions/doublets_vec.m — MATLAB, 45 lignes
- Adrian/functions/extractAndConcatenateData.m — MATLAB, 30 lignes
- Adrian/functions/extractSpecificData.m — MATLAB, 30 lignes
- Adrian/functions/extractSpecificData_with_trials.m — MATLAB, 35 lignes
- Adrian/functions/findmultiplets.m — MATLAB, 58 lignes
- Adrian/functions/get_bits.m — MATLAB, 10 lignes
- Adrian/functions/get_bits_kde.m — MATLAB, 7 lignes
- Adrian/functions/get_start_end_ts.m — MATLAB, 9 lignes
- Adrian/functions/get_ticks.m — MATLAB, 13 lignes
- Adrian/functions/get_ticks_peak.m — MATLAB, 12 lignes
- Adrian/functions/hisfit_custom.m — MATLAB, 19 lignes
- Adrian/functions/ripple_after_c3short.m — MATLAB, 18 lignes
- Adrian/functions/state_metrics.m — MATLAB, 26 lignes
- Adrian/functions/transition_network.m — MATLAB, 47 lignes
- Adrian/functions/transition_network_poe.m — MATLAB, 99 lignes
- Adrian/functions/truncate_exact_bin.m — MATLAB, 16 lignes
- Adrian/markov_studyday.m — MATLAB, 96 lignes
- Adrian/markov_studyday_splitC3.m — MATLAB, 104 lignes
- Adrian/mazzucato_scripts/+aux/ElimSilent.m — MATLAB, 88 lignes
- Adrian/mazzucato_scripts/+aux/PlotHistStairs.m — MATLAB, 51 lignes
- Adrian/mazzucato_scripts/+aux/RecheckSilent.m — MATLAB, 24 lignes
- Adrian/mazzucato_scripts/+aux/colorspace.m — MATLAB, 493 lignes
- Adrian/mazzucato_scripts/+aux/create_params.m — MATLAB, 140 lignes
- Adrian/mazzucato_scripts/+aux/create_params_EI.m — MATLAB, 163 lignes
- Adrian/mazzucato_scripts/+aux/distinguishable_colors.m — MATLAB, 160 lignes
- Adrian/mazzucato_scripts/+aux/eegfilt.m — MATLAB, 181 lignes
- Adrian/mazzucato_scripts/+aux/figset.m — MATLAB, 26 lignes
- Adrian/mazzucato_scripts/+aux/fun_LIF_SIM.m — MATLAB, 187 lignes
- Adrian/mazzucato_scripts/+aux/fun_PlotTrial.m — MATLAB, 392 lignes
- Adrian/mazzucato_scripts/+aux/fun_SynWeights.m — MATLAB, 137 lignes
- Adrian/mazzucato_scripts/+aux/fun_SynWeights_EI.m — MATLAB, 272 lignes
- Adrian/mazzucato_scripts/+aux/fun_create_ensemble.m — MATLAB, 99 lignes
- Adrian/mazzucato_scripts/+aux/fun_stim.m — MATLAB, 102 lignes
- Adrian/mazzucato_scripts/+aux/gaussfilt.m — MATLAB, 65 lignes
- Adrian/mazzucato_scripts/+aux/jbfill.m — MATLAB, 45 lignes
- Adrian/mazzucato_scripts/+aux/v2struct.m — MATLAB, 362 lignes
- Adrian/mazzucato_scripts/+hmm/Spikes2Seq.m — MATLAB, 35 lignes
- Adrian/mazzucato_scripts/+hmm/funCriterion.m — MATLAB, 35 lignes
- Adrian/mazzucato_scripts/+hmm/funHMM.m — MATLAB, 81 lignes
- Adrian/mazzucato_scripts/+hmm/fun_HMMRasterplot.m — MATLAB, 179 lignes
- Adrian/mazzucato_scripts/+hmm/fun_HMMRasterplot_lowerhalf.m — MATLAB, 191 lignes
- Adrian/mazzucato_scripts/+hmm/fun_HMM_BIC_AIC.m — MATLAB, 30 lignes
- Adrian/mazzucato_scripts/+hmm/fun_HMM_XVAL.m — MATLAB, 55 lignes
- Adrian/mazzucato_scripts/+hmm/fun_HMM_binning.m — MATLAB, 26 lignes
- Adrian/mazzucato_scripts/+hmm/fun_HMM_decoding.m — MATLAB, 87 lignes
- Adrian/mazzucato_scripts/+hmm/fun_HMM_modelSel.m — MATLAB, 149 lignes
- Adrian/mazzucato_scripts/+hmm/fun_HMM_postfit.m — MATLAB, 28 lignes
- Adrian/mazzucato_scripts/+hmm/fun_HMM_postfit_sequence.m — MATLAB, 45 lignes
- Adrian/mazzucato_scripts/+hmm/fun_HMM_training.m — MATLAB, 100 lignes
- Adrian/mazzucato_scripts/+hmm/fun_HMM_training_NOPARFOR.m — MATLAB, 98 lignes
- Adrian/mazzucato_scripts/+hmm/hmmCriterion.m — MATLAB, 53 lignes
- Adrian/mazzucato_scripts/+hmm/hmmtrain.m — MATLAB, 299 lignes
- Adrian/mazzucato_scripts/+hmm/low_bernoulli.m — MATLAB, 43 lignes
- Adrian/mazzucato_scripts/+hmm/plot_tpm_epm.m — MATLAB, 57 lignes
- Adrian/mazzucato_scripts/+hmm/plot_trials.m — MATLAB, 36 lignes
- Adrian/mazzucato_scripts/demo1_simulation.m — MATLAB, 108 lignes
- Adrian/mazzucato_scripts/demo2_HMM_Simple.m — MATLAB, 81 lignes
- Adrian/mazzucato_scripts/demo3_HMM_Full.m — MATLAB, 73 lignes
- Adrian/multiplet_count_table.m — MATLAB, 285 lignes
- Adrian/multiplet_wspindle_count_table.m — MATLAB, 622 lignes
- Adrian/new_figure_clusters.py — Python, 59 lignes
- Adrian/new_figure_clusters_part3.py — Python, 322 lignes
- Adrian/new_figure_clusters_part3_continuation.py — Python, 122 lignes
- Adrian/new_figure_clusters_part3_noclusters.py — Python, 162 lignes
- Adrian/new_figure_clusters_part3_rgs.py — Python, 470 lignes
- Adrian/prepare_markov.m — MATLAB, 211 lignes
- Adrian/prepare_markov_nontrial.m — MATLAB, 512 lignes
- Adrian/prepare_markov_nontrial_splitC3.m — MATLAB, 585 lignes
- Adrian/prepare_markov_nontrial_splitC3_with_trials.m — MATLAB, 552 lignes
- Adrian/redoing_pca_figure.m — MATLAB, 599 lignes
- Adrian/sequence_lags.m — MATLAB, 162 lignes
- Adrian/sequence_lags_shscwr.m — MATLAB, 61 lignes
- Adrian/state_characteristics.m — MATLAB, 311 lignes
- Adrian/subsampled_ripples_characteristics.m — MATLAB, 194 lignes
- Adrian/view_rgs_and_cbd_pointclouds.m — MATLAB, 154 lignes
- Adrian/view_rgs_and_cbd_pointclouds_gmmapproach.m — MATLAB, 162 lignes
- Kopal/Cluster_Cooccurrence_detection.m — MATLAB, 306 lignes
- Kopal/Cluster_seg_into_trials.m — MATLAB, 35 lignes
- Kopal/Ripple_naming_system.m — MATLAB, 75 lignes
- Kopal/SWR_Cluster_PhaseAnalysis.m — MATLAB, 626 lignes
- Kopal/Sequence_Detection_Cluster.m — MATLAB, 706 lignes
- Kopal/cooccurence_both_sides.m — MATLAB, 36 lignes
- Kopal/cooccurrence_vec.m — MATLAB, 37 lignes
- Pelin/GC_ripple_4clusters_median_wa.m — MATLAB, 158 lignes
- Pelin/MAIN_script_ripples_pca_threshold_gmm.m — MATLAB, 513 lignes
- Pelin/functions/CaptureFigVid.m — MATLAB, 108 lignes
- Pelin/functions/bluewhitered.m — MATLAB, 123 lignes
- Pelin/functions/chanscale_common.m — MATLAB, 176 lignes
- Pelin/functions/colorbar_cluster12.m — MATLAB, 122 lignes
- Pelin/functions/colorbar_cluster13.m — MATLAB, 123 lignes
- Pelin/functions/colorbar_cluster23.m — MATLAB, 124 lignes
- Pelin/functions/colorbar_treatment.m — MATLAB, 128 lignes
- Pelin/functions/create_timecell.m — MATLAB, 7 lignes
- Pelin/functions/createauto_timefreq.m — MATLAB, 22 lignes
- Pelin/functions/delta_specs.m — MATLAB, 87 lignes
- Pelin/functions/delta_specs_faster.m — MATLAB, 63 lignes
- Pelin/functions/ft_getminmax.m — MATLAB, 559 lignes
- Pelin/functions/getdimord.m — MATLAB, 675 lignes
- Pelin/functions/getdimsiz.m — MATLAB, 70 lignes
- Pelin/functions/power_signal.m — MATLAB, 5 lignes
- Pelin/functions/rollback_provenance.m — MATLAB, 92 lignes
- Pelin/functions/stats_high_granger.m — MATLAB, 136 lignes
- Pelin/functions/stats_high_spec.m — MATLAB, 121 lignes
- Pelin/functions/time_frequency.m — MATLAB, 19 lignes
- Pelin/granger_automation.m — MATLAB, 59 lignes
- Pelin/granger_main.m — MATLAB, 332 lignes
- Pelin/granger_main_cluster_Veh_vs_RGS.m — MATLAB, 403 lignes
- Pelin/record_video_figFile.m — MATLAB, 6 lignes
- Pelin/revision2025/cluster_characteristics.m — MATLAB, 59 lignes
- Pelin/revision2025/embed_contrast_stats_in_fig_files.m — MATLAB, 179 lignes
- Pelin/revision2025/extract_values_from_figFiles_Vehicle.m — MATLAB, 78 lignes
- Pelin/revision2025/normalize_colorbar_dir_freq_clusterComparison.m — MATLAB, 72 lignes
- Pelin/revision2025/normalize_stats_contrast_colorbars.m — MATLAB, 149 lignes
- Pelin/revision2025/splitDataByRat.m — MATLAB, 2 368 lignes
- Pelin/spectrogram_automation.m — MATLAB, 80 lignes
- Pelin/spectrogram_main.m — MATLAB, 100 lignes
- README.md — Texte, 7 lignes