Predicting membrane protein localization by deep learning on structure and chemistry.

Revue : Protein science : a publication of the Protein Society

Parution : Mardi 1 septembre 2026

Statut : code vérifié

Méthodes : Apprentissage, Statistiques

Carte de traçage

Proposée automatiquement : ces liens ont été trouvés dans l'article et vérifiés à la source, sans relecture humaine. Elle recevra un DOI Zenodo quand un de ses auteurs l'aura validée avec son ORCID.

Code des auteurs

bivekpok/gpsfortmds

Licence : Apache

État : le lien répond

Preuve : fichiers inventoriés

Commit : 956da8977dac381b8deaf0ce03f0294f62f027aa

Langages : Python (136), C++ (4), CUDA (3), C/C++ (3), Shell (1)

Trouvé : « DATA AVAILABILITY STATEMENT »

148 fichiers, à lire à la source

La licence de ce dépôt ne permet pas d'en republier le texte : lisez-le à la source.

gpstmd/filter_foldseek_redundant_by_membrane.py — Python, 106 lignes
gpstmd/github_uploads/datasplitterv2.py — Python, 88 lignes
gpstmd/github_uploads/gearnet_modules.py — Python, 239 lignes
gpstmd/github_uploads/gnet_all_prod.sh — Shell, 108 lignes
gpstmd/github_uploads/train_splits.py — Python, 184 lignes
torchdrug/setup.py — Python, 62 lignes
torchdrug/torchdrug/__init__.py — Python, 15 lignes
torchdrug/torchdrug/core/__init__.py — Python, 9 lignes
torchdrug/torchdrug/core/core.py — Python, 372 lignes
torchdrug/torchdrug/core/engine.py — Python, 542 lignes
torchdrug/torchdrug/core/engine2.py — Python, 546 lignes
torchdrug/torchdrug/core/engine3.py — Python, 428 lignes
torchdrug/torchdrug/core/engine4.py.py — Python, 431 lignes
torchdrug/torchdrug/core/engine_org.py — Python, 295 lignes
torchdrug/torchdrug/core/logger.py — Python, 127 lignes
torchdrug/torchdrug/core/meter.py — Python, 124 lignes
torchdrug/torchdrug/data/__init__.py — Python, 19 lignes
torchdrug/torchdrug/data/constant.py — Python, 52 lignes
torchdrug/torchdrug/data/dataloader.py — Python, 104 lignes
torchdrug/torchdrug/data/dataset.py — Python, 1 223 lignes
torchdrug/torchdrug/data/dictionary.py — Python, 285 lignes
torchdrug/torchdrug/data/feature.py — Python, 347 lignes
torchdrug/torchdrug/data/graph.py — Python, 1 851 lignes
torchdrug/torchdrug/data/molecule.py — Python, 1 034 lignes
torchdrug/torchdrug/data/protein.py — Python, 1 375 lignes
torchdrug/torchdrug/data/rdkit/__init__.py — Python, 1 ligne
torchdrug/torchdrug/data/rdkit/draw.py — Python, 54 lignes
torchdrug/torchdrug/datasets/__init__.py — Python, 64 lignes
torchdrug/torchdrug/datasets/alphafolddb.py — Python, 155 lignes
torchdrug/torchdrug/datasets/bace.py — Python, 36 lignes
torchdrug/torchdrug/datasets/bbbp.py — Python, 36 lignes
torchdrug/torchdrug/datasets/beta_lactamase.py — Python, 51 lignes
torchdrug/torchdrug/datasets/binary_localization.py — Python, 52 lignes
torchdrug/torchdrug/datasets/bindingdb.py — Python, 72 lignes
torchdrug/torchdrug/datasets/cep.py — Python, 36 lignes
torchdrug/torchdrug/datasets/chembl_filtered.py — Python, 36 lignes
torchdrug/torchdrug/datasets/citeseer.py — Python, 35 lignes
torchdrug/torchdrug/datasets/clintox.py — Python, 38 lignes
torchdrug/torchdrug/datasets/cora.py — Python, 35 lignes
torchdrug/torchdrug/datasets/delaney.py — Python, 36 lignes
torchdrug/torchdrug/datasets/enzyme_commission.py — Python, 135 lignes
torchdrug/torchdrug/datasets/fb15k.py — Python, 106 lignes
torchdrug/torchdrug/datasets/fluorescence.py — Python, 51 lignes
torchdrug/torchdrug/datasets/fold.py — Python, 53 lignes
torchdrug/torchdrug/datasets/freesolv.py — Python, 37 lignes
torchdrug/torchdrug/datasets/gene_ontology.py — Python, 145 lignes
torchdrug/torchdrug/datasets/hetionet.py — Python, 57 lignes
torchdrug/torchdrug/datasets/hiv.py — Python, 36 lignes
torchdrug/torchdrug/datasets/human_ppi.py — Python, 67 lignes
torchdrug/torchdrug/datasets/lipophilicity.py — Python, 36 lignes
torchdrug/torchdrug/datasets/malaria.py — Python, 37 lignes
torchdrug/torchdrug/datasets/moses.py — Python, 48 lignes
torchdrug/torchdrug/datasets/muv.py — Python, 38 lignes
torchdrug/torchdrug/datasets/opv.py — Python, 97 lignes
torchdrug/torchdrug/datasets/pcqm4m.py — Python, 38 lignes
torchdrug/torchdrug/datasets/pdbbind.py — Python, 74 lignes
torchdrug/torchdrug/datasets/ppi_affinity.py — Python, 67 lignes
torchdrug/torchdrug/datasets/proteinnet.py — Python, 69 lignes
torchdrug/torchdrug/datasets/pubchem110m.py — Python, 47 lignes
torchdrug/torchdrug/datasets/pubmed.py — Python, 95 lignes
torchdrug/torchdrug/datasets/qm8.py — Python, 85 lignes
torchdrug/torchdrug/datasets/qm9.py — Python, 71 lignes
torchdrug/torchdrug/datasets/secondary_structure.py — Python, 70 lignes
torchdrug/torchdrug/datasets/sider.py — Python, 37 lignes
torchdrug/torchdrug/datasets/solubility.py — Python, 51 lignes
torchdrug/torchdrug/datasets/stability.py — Python, 51 lignes
torchdrug/torchdrug/datasets/subcellular_localization.py — Python, 51 lignes
torchdrug/torchdrug/datasets/tox21.py — Python, 39 lignes
torchdrug/torchdrug/datasets/toxcast.py — Python, 37 lignes
torchdrug/torchdrug/datasets/uspto50k.py — Python, 264 lignes
torchdrug/torchdrug/datasets/wn18.py — Python, 106 lignes
torchdrug/torchdrug/datasets/yago310.py — Python, 56 lignes
torchdrug/torchdrug/datasets/yeast_ppi.py — Python, 67 lignes
torchdrug/torchdrug/datasets/zinc250k.py — Python, 37 lignes
torchdrug/torchdrug/datasets/zinc2m.py — Python, 53 lignes
torchdrug/torchdrug/layers/__init__.py — Python, 37 lignes
torchdrug/torchdrug/layers/block.py — Python, 167 lignes
torchdrug/torchdrug/layers/common.py — Python, 349 lignes
torchdrug/torchdrug/layers/conv.py — Python, 818 lignes
torchdrug/torchdrug/layers/distribution.py — Python, 50 lignes
torchdrug/torchdrug/layers/flow.py — Python, 64 lignes
torchdrug/torchdrug/layers/functional/__init__.py — Python, 17 lignes
torchdrug/torchdrug/layers/functional/embedding.py — Python, 269 lignes
torchdrug/torchdrug/layers/functional/extension/__init__.py — Python, 1 ligne
torchdrug/torchdrug/layers/functional/extension/embedding.cpp — C++, 416 lignes
torchdrug/torchdrug/layers/functional/extension/embedding.cu — CUDA, 412 lignes
torchdrug/torchdrug/layers/functional/extension/embedding.h — C/C++, 88 lignes
torchdrug/torchdrug/layers/functional/extension/rspmm.cpp — C++, 263 lignes
torchdrug/torchdrug/layers/functional/extension/rspmm.cu — CUDA, 374 lignes
torchdrug/torchdrug/layers/functional/extension/rspmm.h — C/C++, 85 lignes
torchdrug/torchdrug/layers/functional/extension/spmm.cpp — C++, 283 lignes
torchdrug/torchdrug/layers/functional/extension/spmm.cu — CUDA, 333 lignes
torchdrug/torchdrug/layers/functional/extension/spmm.h — C/C++, 85 lignes
torchdrug/torchdrug/layers/functional/functional.py — Python, 529 lignes
torchdrug/torchdrug/layers/functional/spmm.py — Python, 378 lignes
torchdrug/torchdrug/layers/geometry/__init__.py — Python, 9 lignes
torchdrug/torchdrug/layers/geometry/function.py — Python, 367 lignes
torchdrug/torchdrug/layers/geometry/graph.py — Python, 194 lignes
torchdrug/torchdrug/layers/pool.py — Python, 207 lignes
torchdrug/torchdrug/layers/readout.py — Python, 197 lignes
torchdrug/torchdrug/layers/sampler.py — Python, 92 lignes
torchdrug/torchdrug/metrics/__init__.py — Python, 14 lignes
torchdrug/torchdrug/metrics/metric.py — Python, 396 lignes
torchdrug/torchdrug/metrics/rdkit/__init__.py — Python, 1 ligne
torchdrug/torchdrug/metrics/rdkit/sascorer.py — Python, 90 lignes
torchdrug/torchdrug/models/__init__.py — Python, 49 lignes
torchdrug/torchdrug/models/bert.py — Python, 100 lignes
torchdrug/torchdrug/models/chebnet.py — Python, 89 lignes
torchdrug/torchdrug/models/cnn.py — Python, 214 lignes
torchdrug/torchdrug/models/embedding.py — Python, 242 lignes
torchdrug/torchdrug/models/esm.py — Python, 172 lignes
torchdrug/torchdrug/models/flow.py — Python, 121 lignes
torchdrug/torchdrug/models/gat.py — Python, 88 lignes
torchdrug/torchdrug/models/gcn.py — Python, 168 lignes
torchdrug/torchdrug/models/gearnet.py — Python, 123 lignes
torchdrug/torchdrug/models/gin.py — Python, 91 lignes
torchdrug/torchdrug/models/infograph.py — Python, 167 lignes
torchdrug/torchdrug/models/kbgat.py — Python, 62 lignes
torchdrug/torchdrug/models/lstm.py — Python, 90 lignes
torchdrug/torchdrug/models/mpnn.py — Python, 91 lignes
torchdrug/torchdrug/models/neuralfp.py — Python, 96 lignes
torchdrug/torchdrug/models/neurallp.py — Python, 112 lignes
torchdrug/torchdrug/models/physicochemical.py — Python, 145 lignes
torchdrug/torchdrug/models/schnet.py — Python, 84 lignes
torchdrug/torchdrug/models/statistic.py — Python, 82 lignes
torchdrug/torchdrug/patch.py — Python, 145 lignes
torchdrug/torchdrug/tasks/__init__.py — Python, 50 lignes
torchdrug/torchdrug/tasks/contact_prediction.py — Python, 172 lignes
torchdrug/torchdrug/tasks/generation.py — Python, 1 552 lignes
torchdrug/torchdrug/tasks/pretrain.py — Python, 584 lignes
torchdrug/torchdrug/tasks/property_prediction.py — Python, 654 lignes
torchdrug/torchdrug/tasks/reasoning.py — Python, 253 lignes
torchdrug/torchdrug/tasks/retrosynthesis.py — Python, 1 208 lignes
torchdrug/torchdrug/tasks/task.py — Python, 39 lignes
torchdrug/torchdrug/tasks/try.py — Python, 15 lignes
torchdrug/torchdrug/transforms/__init__.py — Python, 7 lignes
torchdrug/torchdrug/transforms/transform.py — Python, 314 lignes
torchdrug/torchdrug/utils/__init__.py — Python, 13 lignes
torchdrug/torchdrug/utils/comm.py — Python, 269 lignes
torchdrug/torchdrug/utils/decorator.py — Python, 297 lignes
torchdrug/torchdrug/utils/extension/__init__.py — Python, 1 ligne
torchdrug/torchdrug/utils/extension/torch_ext.cpp — C++, 14 lignes
torchdrug/torchdrug/utils/file.py — Python, 168 lignes
torchdrug/torchdrug/utils/io.py — Python, 86 lignes
torchdrug/torchdrug/utils/plot.py — Python, 175 lignes
torchdrug/torchdrug/utils/pretty.py — Python, 75 lignes
torchdrug/torchdrug/utils/torch.py — Python, 190 lignes
README.md — Texte, 345 lignes

huggingface.co/spaces/bivek77/gpsfortmd

Licence : MIT

État : le lien répond

Preuve : fichiers inventoriés

Commit : 4f439ac0cac5a6c63e2a3e49978ce21ac44dd2bd

Langages : Python (136), C++ (4), CUDA (3), C/C++ (3)

Trouvé : « DATA AVAILABILITY STATEMENT »